| Genome | Number of hits |
|---|
| Ralstonia solanacearum phi RS1 prophage | 1430 |
| Escherichia coli phi CP-933M prophage | 1062 |
| Escherichia coli phi Sp9 prophage | 937 |
| Escherichia coli phi CP-933P prophage | 864 |
| Escherichia coli phi Sp10 prophage | 862 |
| Escherichia coli phi Sp12 prophage | 839 |
| Escherichia coli phi Sp6 prophage | 816 |
| Burkholderia thailandensis phi E125 | 814 |
| Escherichia coli phi CP-933V prophage | 807 |
| Mycobacterium phi Omega | 794 |
| Escherichia coli phi CP-933N prophage | 777 |
| Escherichia coli phi CP-933 prophage | 777 |
| Klebsiella oxytoca phi KO2 | 776 |
| Xylella fastidiosa phi Xpd5 prophage | 767 |
| Shewanella oneidensis phi LambdaSo prophage | 765 |
| Mesorhizobium loti phi Meso2 prophage | 744 |
| Burkholderia pseudomallei phi 1026b | 741 |
| Escherichia coli phi CP-933K prophage | 697 |
| Escherichia coli phi Sp3 prophage | 678 |
| Salmonella typhimurium phi Gifsy-2 prophage | 665 |
| Burkholderia cepacia phi Bcep176 | 659 |
| Yersinia enterocolitica phi PY54 | 642 |
| Mycobacterium phi CJW1 | 623 |
| Escherichia coli phi CP-933U prophage | 611 |
| Secondary endosymbiont Pea Aphid phi APSE-1 | 602 |
| Pseudomonas aeruginosa phi D3 | 600 |
| Xylella fastidiosa phi XfP5 prophage | 597 |
| Escherichia coli phi Sp15 prophage | 576 |
| Shewanella oneidensis phi MuSo1 prophage | 547 |
| Escherichia coli phi N15 | 538 |
| Salmonella typhimurium phi ST64B | 537 |
| Staphylococcus aureus phi 2638A | 536 |
| Xylella fastidiosa phi XfP2 prophage | 533 |
| Staphylococcus aureus phi 47 | 532 |
| Escherichia coli phi P27 | 531 |
| Ralstonia solanacearum phi RS4 prophage | 520 |
| Staphylococcus aureus phi Sa2mw prophage | 516 |
| Staphylococcus aureus phi 3A | 515 |
| Escherichia coli phi HK97 | 506 |
| Bacillus subtilis phi 105 | 503 |
| Xanthomonas oryzae phi Xp10 | 500 |
| Salmonella typhimurium phi Fels-1 prophage | 496 |
| Streptococcus pyogenes phi speC prophage | 494 |
| Xylella fastidiosa phi XfP1 prophage | 490 |
| Shigella flexneri phi V | 488 |
| Pseudomonas putida phi PP04 prophage | 480 |
| Pseudomonas putida phi PP02 prophage | 478 |
| Staphylococcus aureus phi 12 | 471 |
| Streptococcus pyogenes phi 315.2 prophage | 458 |
| Lactobacillus rhamnosus phi Lc-Nu | 455 |
| Escherichia coli phi CP073-5 prophage | 455 |
| Escherichia coli phi Sp18 prophage | 450 |
| Prochlorococcus marinus phi P-SSM2 | 450 |
| Pseudomonas aeruginosa phi F116 | 448 |
| Bacillus anthracis phi Gamma | 446 |
| Bordetella phi BPP-1 | 446 |
| Bacillus anthracis phi Cherry | 445 |
| Pseudomonas aeruginosa phi D3112 | 443 |
| Escherichia coli phi CP073-4 prophage | 439 |
| Vibrio parahaemolyticus phi VP16C | 434 |
| Mesorhizobium loti phi Meso1 prophage | 428 |
| Burkholderia cepacia complex phi BcepC6B | 428 |
| Vibrio parahaemolyticus phi VP16T | 425 |
| Shigella flexneri phi Flex3 prophage | 425 |
| Burkholderia cepacia phi BcepNazgul | 420 |
| Salmonella typhimurium phi Gifsy-1 prophage | 417 |
| Streptococcus agalactiae phi LambdaSa2 prophage | 407 |
| Salmonella typhimurium phi KS7 | 401 |
| Lactobacillus casei phi A2 | 401 |
| Staphylococcus aureus phi PVL | 396 |
| Staphylococcus aureus phi Sa3mw prophage | 395 |
| Lactococcus phi 4268; Lactococcus phi P335 | 393 |
| Pseudomonas putida phi PP01 prophage | 389 |
| Clostridium acetobutylicum phi Clo2 prophage | 387 |
| Escherichia coli phi Sp14 prophage | 385 |
| Escherichia coli phi CP-933R prophage | 383 |
| Staphylococcus phi Twort | 379 |
| alpha-proteobacterium phi JL001 | 379 |
| Staphylococcus aureus phi PV83 prophage | 372 |
| Staphylococcus aureus phi 42e | 372 |
| Bordetella phi BMP-1 | 371 |
| Escherichia coli phi Mu | 370 |
| Escherichia coli phi Sp4 prophage | 368 |
| Staphylococcus aureus phi SLT | 361 |
| Bordetella phi BIP-1 | 360 |
| Escherichia coli phi HK022 | 358 |
| Streptococcus pyogenes phi speA prophage | 350 |
| Escherichia coli phi CP073-2 prophage | 346 |
| Escherichia coli phi Sp8 prophage | 345 |
| Staphylococcus aureus phi 13 | 344 |
| Mycobacterium phi Che9c | 343 |
| Staphylococcus aureus phi G1 | 341 |
| Escherichia coli phi CP-933X prophage | 341 |
| Neisseria meningitidis phi Pnm1 prophage | 339 |
| Pseudomonas aeruginosa phi PaP2 | 337 |
| Streptococcus pyogenes phi 315.1 prophage | 332 |
| Enterobacteria phi T1 | 326 |
| Burkholderia cenocepacia phi BcepMu | 322 |
| Lactobacillus casei phi AT3 | 321 |
| Staphylococcus phi K | 315 |
| Escherichia coli phi lambda | 314 |
| Myxococcus xanthus phi Mx8 | 313 |
| Salmonella typhimurium phi ST104 | 312 |
| Escherichia coli phi Sp7 prophage | 310 |
| Pseudomonas aeruginosa phi B3 | 307 |
| Burkholderia cenocepacia phi Bcep1 | 306 |
| Xanthomonas campestris phi Xp15 | 306 |
| Salmonella typhimurium phi ES18 | 301 |
| Escherichia coli phi 933C prophage | 299 |
| Shigella flexneri phi Flex5 prophage | 299 |
| Sinorhizobium meliloti phi PBC5 | 298 |
| Lactobacillus phi adh | 292 |
| Escherichia coli phi CP-933Oc prophage | 287 |
| Xylella fastidiosa phi Xpd6 prophage | 286 |
| Vibrio harveyi phi VHML | 282 |
| Streptococcus thermophilus phi 7201 | 280 |
| Lactococcus lactis phi BK5-T | 273 |
| Haemophilus influenzae phi FluMu prophage | 273 |
| Xylella fastidiosa phi XfP4 prophage | 272 |
| Escherichia coli phi Sp11 prophage | 267 |
| Xylella fastidiosa phi Xpd4 prophage | 265 |
| Shewanella oneidensis phi MuSo2 prophage | 260 |
| Salmonella Typhi Sti3 prophage | 258 |
| Pseudomonas aeruginosa phi PaP3 | 254 |
| Escherichia coli phi JK06 | 249 |
| Streptococcus thermophilus phi Sfi21 | 247 |
| Yersinia pestis phi YP5 prophage | 247 |
| Salmonella phi Felix 01 | 242 |
| Lactobacillus plantarum phi LP65 | 242 |
| Streptococcus pyogenes phi 315.6 prophage | 240 |
| Lactococcus lactis phi bIL286 prophage | 240 |
| Natrialba magadii phi Ch1 | 237 |
| Xylella fastidiosa phi Xpd8 prophage | 236 |
| Listeria monocytogenesphi List-M2 prophage | 234 |
| Streptococcus thermophilus phi DT1 | 233 |
| Escherichia coli phi CP-933Od prophage | 228 |
| Lactococcus lactis phi Tuc2009 | 224 |
| Neisseria meningitidis phi Pnm2 prophage | 224 |
| Bacillus subtilis phi Spbeta prophage | 223 |
| Bacillus subtilis phi SPBc2 | 223 |
| Streptomyces lividans phi BT1 | 221 |
| Burkholderia cepacia phi Bcep781 | 219 |
| Escherichia coli phi T7 | 219 |
| Clostridium tetani E88 phi Cpt3 prophage | 218 |
| Listeria phi 2389 | 216 |
| Burkholderia cepacia phi Bcep43 | 216 |
| Brucella melitensis 16M phi Bruc1 prophage | 215 |
| Pseudomonas phi KZ | 210 |
| Lactococcus lactis phi bIL309 prophage | 209 |
| Clostridium perfringens phi 3626 | 209 |
| Xylella fastidiosa phi XfP7 prophage | 208 |
| Salmonella typhimurium phi P22 | 205 |
| Neisseria meningitidis phi NeisMu1 prophage | 204 |
| Streptomyces phi C-31 | 204 |
| Staphylococcus aureus phi Mu50B prophage | 203 |
| Mycobacterium phi Corndog | 200 |
| Enterobacteria phi Sf6 | 197 |
| Yersinia pestis phi Yers1 prophage | 195 |
| Xanthomonas axonopodis phi XacP1 prophage | 194 |
| Lactobacillus plantarum phi JL-1 | 193 |
| Yersinia pestis phi A1122 | 192 |
| Mesorhizobium loti phi Meso3 prophage | 190 |
| Salmonella typhimurium phi ST64T | 189 |
| Salmonella phi epsilon15 | 189 |
| Staphylococcus aureus phi N315 | 187 |
| Burkholderia cepacia phi Bcep22 | 187 |
| Streptococcus thermophilus phi Sfi19 | 186 |
| Xylella fastidiosa phi Xpd1 prophage | 185 |
| Escherichia coli phi e14 prophage | 183 |
| Bacillus subtilis phi SPP1 | 179 |
| Bacillus cereus phi phBC6A51 | 179 |
| Lactococcus lactis phi TP901-1 | 173 |
| Enterobacteria phi RB43 | 173 |
| Escherichia coli phi CP073-7 prophage | 173 |
| Escherichia coli phi CP-933Oa prophage | 172 |
| Enterobacteria phi RB49 | 171 |
| Escherichia coli phi Sp5 prophage | 171 |
| Escherichia coli phi Stx2 II | 170 |
| Shigella flexneri phi Flex1 prophage | 168 |
| Agrobacterium tumefaciens phi Tum2 prophage | 167 |
| Escherichia coli phi Stx1 | 166 |
| Listeria innocua phi List-I5 prophage | 164 |
| Escherichia coli phi Stx2 | 164 |
| Streptococcus pyogenes phi 370.1 prophage | 164 |
| Burkholderia cenocepacia phi BcepB1A | 164 |
| Escherichia coli phi VT2-Sa | 163 |
| Mycobacterium phi Che9d | 163 |
| Xylella fastidiosa phi XfP3 prophage | 162 |
| Escherichia coli phi 933W prophage | 161 |
| Staphylococcus aureus phi X2 | 160 |
| Clostridium tetani E88 phi Cpt2 prophage | 159 |
| Xylella fastidiosa phi Xpd7 prophage | 159 |
| Pseudomonas aeruginosa phi PyocinR prophage | 157 |
| Vibrio phi VP2 | 157 |
| Pseudomonas aeruginosa phi PyocinF prophage | 157 |
| Staphylococcus aureus phi 77 | 156 |
| Xanthomonas campestris phi XccP1 prophage | 156 |
| Shigella flexneri phi Flex8 prophage | 156 |
| Enterobacteria phi T5 | 156 |
| Lactococcus lactis phi bIL170 prophage | 154 |
| Clostridium tetani E88 phi Cpt1 prophage | 152 |
| Yersinia enterocolitica phi YeO3-12 | 149 |
| Staphylococcus aureus phi Mu50A prophage | 149 |
| Prochlorococcus marinus phi P-SSM4 | 148 |
| Escherichia coli phi W | 147 |
| Salmonella Typhi Sti11 prophage | 144 |
| Mycobacterium phi D29 | 143 |
| Xanthomonas axonopodis phi XacP2 prophage | 141 |
| Vibrio parahaemolyticus phi KVP40 | 141 |
| Staphylococcus aureus phi 85 | 140 |
| Escherichia coli phi CPS-53 prophage | 140 |
| Escherichia coli phi DLP-12 prophage | 137 |
| Staphylococcus aureus phi 88 | 136 |
| Streptococcus pyogenes phi speL_M prophage | 135 |
| Escherichia coli phi 186 | 135 |
| Escherichia coli phi T4 | 134 |
| Roseobacter phi SIO1 | 134 |
| Clostridium perfringens str. 13 phi Cpr1 prophage | 132 |
| Pseudomonas aeruginosa phi CTX | 131 |
| Salmonella phi PSP3 | 129 |
| Caulobacter crescentus CB15 phi Cc1 prophage | 129 |
| Streptococcus pyogenes phi 370.3-like prophage | 129 |
| Escherichia coli phi Sp13 prophage | 128 |
| Escherichia coli phi CP-933T prophage | 128 |
| Vibrio phi VP5 | 125 |
| Staphylococcus aureus phi ROSA | 124 |
| Escherichia coli phi T3 | 124 |
| Prochlorococcus marinus phi P-SSP7 | 123 |
| Lactococcus lactis phi r1t | 121 |
| Lactococcus lactis phi bIL285 prophage | 121 |
| Yersinia pestis phi YP8 prophage | 121 |
| Escherichia coli phi P2 | 120 |
| Yersinia pestis phi L-413C | 117 |
| Enterobacteria phi RB69 | 117 |
| Rhodothermus marinus phi RM 378 | 116 |
| Listonella pelagia phi HSIC | 116 |
| Bacillus cereus phi phBC6A52 | 116 |
| Aeromonas salmonicida phi 44RR2.8t | 114 |
| Aeromonas phi 31 | 114 |
| Clostridium acetobutylicum phi Clo1 prophage | 113 |
| Mycobacterium phi Bxz2 | 112 |
| Escherichia coli phi P1 | 112 |
| Escherichia coli phi HK620 | 111 |
| Pseudomonas phi gh-1 | 111 |
| Mycobacterium avium phi TM4 | 108 |
| Mycobacterium smegmatis phi Bxb1 | 108 |
| Pseudomonas putida phi PP03 prophage | 107 |
| Streptococcus thermophilus phi Sfi11 | 107 |
| Listeria innocua phi List-I1 prophage | 105 |
| Aeromonas hydrophila phi Aeh1 | 105 |
| Salmonella Typhi Sti7 prophage | 104 |
| Synechococcus phi S-PM2 | 104 |
| Mycobacterium phi PG1 | 103 |
| Synechococcus cyanophage P60 | 102 |
| Yersinia pestis phi Yers4 prophage | 101 |
| Yersinia pestis phi YP2 prophage | 101 |
| Salmonella Typhi Sti9 prophage | 99 |
| Listeria innocua phi List-I6 prophage | 99 |
| Escherichia coli phi Rac prophage | 97 |
| Streptococcus thermophilus phi O1205 | 95 |
| Haemophilus influenzae phi Flu prophage | 95 |
| Vibrio phi VP4 | 94 |
| Mycobacterium phi L5 | 94 |
| Burkholderia pseudomallei phi 52237 | 94 |
| Streptococcus pyogenes phi 315.4 prophage | 93 |
| Streptococcus pyogenes phi NIH1.1 | 93 |
| Lactococcus lactis phi sk1 | 92 |
| Ralstonia solanacearum phi RS7 prophage | 92 |
| Mycobacterium phi Rosebush | 91 |
| Bacillus subtilis phi SKIN prophage | 91 |
| Streptococcus thermophilus phi 2972 | 91 |
| Shigella flexneri phi Flex4 prophage | 90 |
| Lactobacillus phi G1e | 89 |
| Xylella fastidiosa phi XfP8 prophage | 89 |
| Staphylococcus aureus phi 53 | 87 |
| Salmonella Typhi Sti10 prophage | 85 |
| Yersinia pestis phi Yers2 prophage | 85 |
| Streptococcus pneumoniae phi MM1 | 85 |
| Escherichia coli phi Sp2 prophage | 85 |
| Salmonella typhimurium phi Fels-2 prophage | 84 |
| Agrobacterium tumefaciens phi Tum1 prophage | 82 |
| Salmonella Typhi Sti8 prophage | 82 |
| Escherichia coli phi CP4-6 prophage | 81 |
| Xylella fastidiosa phi XfP6 prophage | 80 |
| Haemophilus influenzae phi MiniFluMu prophage | 80 |
| Listeria monocytogenes phi A118 | 79 |
| Enterobacteria phi K1F | 78 |
| Actinobacillus actinomycetemcomitans phi Aaphi 23 | 77 |
| Escherichia coli phi 4795 | 77 |
| Staphylococcus aureus phi 37 | 77 |
| Mycobacterium phi Barnyard | 76 |
| Escherichia coli phi CP-933I prophage | 76 |
| Bacillus clarkii phi BCJA1c | 76 |
| Shigella flexneri phi Flex6 prophage | 75 |
| Ralstonia solanacearum phi RS5 prophage | 75 |
| Bifidobacterium longum phi BL1 prophage | 75 |
| Mycobacterium phi Bxz1 | 75 |
| Escherichia coli phi P4 | 74 |
| Yersinia pestis phi Yers5 prophage | 73 |
| Vibrio cholerae phi K139 | 73 |
| Yersinia pestis phi YP1 prophage | 73 |
| Streptomyces venezuelae phi VWB | 73 |
| Escherichia coli phi CP073-1 prophage | 72 |
| Sulfolobus tengchongensis spindle-shaped virus STSV1 | 72 |
| Enterobacteria phi SP6 | 71 |
| Bacillus halodurans phi Bh4 prophage | 70 |
| Ralstonia solanacearum phi RS8 prophage | 69 |
| Salmonella Typhi Sti1 prophage | 67 |
| Escherichia coli phi Sp17 prophage | 65 |
| Lactococcus lactis phi c2 | 65 |
| Staphylococcus aureus phi EW | 65 |
| Salmonella Typhi Sti4b prophage | 64 |
| Halorubrum coriense phi HF2 | 63 |
| Shigella flexneri phi Flex9 prophage | 63 |
| Escherichia coli phi QIN prophage | 63 |
| Streptococcus pyogenes phi sda prophage | 63 |
| Bacillus subtilis phi B103 | 63 |
| Mycobacterium phi Che8 | 61 |
| Listeria innocua phi List-I3 prophage | 60 |
| Xanthomonas campestris phi Lf2 prophage | 59 |
| Xanthomonas campestris phi Lf1 prophage | 59 |
| Bacillus subtilis phi PZA | 58 |
| Shigella flexneri phi Flex2 prophage | 57 |
| Streptococcus pneumoniae phi EJ-1 | 57 |
| Flavobacterium phi 11b | 54 |
| Listeria innocua phi List-I4 prophage | 54 |
| Pseudomonas aeroginosa phi Pf1 | 53 |
| Staphylococcus aureus phi 92 | 49 |
| Haemophilus influenzae phi HP1 | 47 |
| Deinococcus radiodurans phi RadMu prophage | 47 |
| Ralstonia solanacearum phi RS6 prophage | 46 |
| Streptococcus agalactiae phi LambdaSa1 prophage | 46 |
| Escherichia coli phi Ike | 45 |
| Staphylococcus aureus phi 187 | 44 |
| Escherichia coli phi M13 | 44 |
| Staphylococcus aureus phi 71 | 44 |
| Pseudomonas aeruginosa phi KMV | 43 |
| Stenotrophomonas phi SMA9 | 42 |
| Haloarcula hispanica phi SH1 | 42 |
| Lactococcus lactis phi LC3 | 41 |
| Lactobacillus johnsonii prophage Lj965 | 41 |
| Xylella fastidiosa phi Xpd2 prophage | 39 |
| Escherichia coli phi I2-2 | 39 |
| Haemophilus influenzae phi HP2 | 39 |
| Lactococcus lactis phi ul36 | 36 |
| Yersinia pestis phi YP4 prophage | 33 |
| Actinoplanes phi Asp2 | 33 |
| Staphylococcus aureus phi 55 | 33 |
| Streptococcus pyogenes phi 370.3 prophage | 33 |
| Bacillus subtilis phi Spgamma prophage | 33 |
| Streptococcus phi C1 | 33 |
| Mycobacterium tuberculosis phi Rv2 prophage | 32 |
| Staphylococcus aureus phi 11 | 30 |
| Bacillus subtilis phi PBSX prophage | 30 |
| Shigella flexneri phi Flex11 prophage | 29 |
| Vibrio phi VpV262 | 29 |
| Escherichia coli phi CP-933Y prophage | 29 |
| Mycobacterium tuberculosis phi Mt2 prophage | 29 |
| Escherichia coli phi CP4-44 prophage | 27 |
| Mycobacterium tuberculosis phi Rv1 prophage | 27 |
| Neisseria meningitidis phi Pnm3 prophage | 26 |
| Streptococcus pyogenes phi 315.5 prophage | 26 |
| Staphylococcus aureus phi 69 | 23 |
| Lactococcus lactis phi bIL310 prophage | 22 |
| Escherichia coli phi CP-933H prophage | 22 |
| Mycobacterium tuberculosis phi Mt1 prophage | 22 |
| Escherichia coli phi CP4-57 prophage | 21 |
| Streptococcus pyogenes phi 370.2 prophage | 21 |
| Escherichia coli phi Sp1 prophage | 21 |
| Staphylococcus aureus phi PT1028 | 19 |
| Streptococcus pyogenes phi 315.3 prophage | 19 |
| Methanothermobacter wolfeii prophage psiM100 | 18 |
| Borrelia burgdorferi lp28-2 prophage | 18 |
| Staphylococcus aureus phi 29 | 18 |
| Escherichia coli phi CP073-3 prophage | 17 |
| Staphylococcus aureus phi 96 | 17 |
| Methanobacterium thermoautotrophicum phi psiM2 | 17 |
| Neisseria meningitidis phi NeisMu2 prophage | 16 |
| Ralstonia solanacearum phi RS2 prophage | 15 |
| Lactobacillus johnsonii prophage Lj928 | 15 |
| Escherichia coli phi CP073-8 prophage | 14 |
| Borrelia burgdorferi phi cp32-8 prophage | 14 |
| Streptomyces coelicolor phi Stc1 prophage | 13 |
| Escherichia coli phi CP-22 prophage | 12 |
| Bacillus halodurans phi Bh2 prophage | 12 |
| Enterobacteria phi PR4 | 12 |
| Escherichia coli phi Sp16 prophage | 12 |
| Salmonella Typhi Sti2 prophage | 11 |
| Staphylococcus aureus phi ETA | 11 |
| Vibrio cholerae phi VibMu prophage | 10 |
| Streptococcus mitis phi SM1 | 10 |
| Escherichia coli phi CP-933Ob prophage | 10 |
| Listeria innocua phi List-I2 prophage | 9 |
| Sulfolobus islandicus rod-shaped virus 1 | 8 |
| Salmonella typhimurium phi Stm6 prophage | 8 |
| Staphylococcus aureus phi 52A | 8 |
| Salmonella typhimurium phi Stm7 prophage | 8 |
| Listeria monocytogenes phi List-M1 | 8 |
| Borrelia burgdorferi phi cp32-1 prophage | 7 |
| Yersinia pestis phi YP3 prophage | 7 |
| Yersinia pestis phi YP7 prophage | 7 |
| Escherichia coli phi CPZ-55 prophage | 7 |
| Sulfolobus islandicus rod-shaped virus 2 | 7 |
| Ralstonia solanacearum phi RS3 prophage | 6 |
| Escherichia coli phi L17 | 6 |
| Enterobacteria phi PR772 | 6 |
| Enterobacteria phi PR3 | 6 |
| Yersinia pestis phi Yers3 prophage | 6 |
| Borrelia burgdorferi lp56 prophage | 6 |
| Enteric bacteria phi PRD1 | 6 |
| Enterobacteria phi PR5 | 6 |
| Borrelia burgdorferi phi cp32-7 prophage | 6 |
| Thermus aquaticus phi IN93 | 5 |
| Xylella fastidiosa phi XfP10 prophage | 5 |
| Pasturella multocida phi Past1 prophage | 5 |
| Mycoplasma arthritidis phi MAV1 | 5 |
| Sulfolobus islandicus phi fv1 | 4 |
| Borrelia burgdorferi phi cp32-6 prophage | 4 |
| Borrelia burgdorferi lp54 prophage | 4 |
| Staphylococcus aureus phi Mu50C prophage | 3 |
| Borrelia burgdorferi phi cp32-9 prophage | 3 |
| Bacillus halodurans phi Bh1 prophage | 3 |
| Sulfolobus turreted icosahedral virus | 3 |
| Shigella flexneri phi Flex7 prophage | 3 |
| Propionibacterium phi B5 | 3 |
| Mycoplasma fermentans phi MFV1 | 3 |
| Deinococcus radiodurans phi DR-1 prophage | 2 |
| Salmonella Typhi Sti6 prophage | 2 |
| Borrelia burgdorferi phi cp32-3 prophage | 2 |
| Lactococcus lactis phi bIL311 prophage | 2 |
| Lactococcus lactis phi bIL312 prophage | 2 |
| Vibrio cholerae phi VGJphi | 2 |
| Pseudomonas syringae phi 12L | 2 |
| Borrelia burgdorferi phi cp32-4 prophage | 2 |
| Vibrio cholerae phi CTXphi prophage | 2 |
| Vibrio cholerae phi fs-2 | 2 |
| Bacillus thuringiensis phi Bam35c | 1 |
| Escherichia coli phi If1 | 1 |
| Pseudomonas syringae phi 12M | 1 |
| Xylella fastidiosa phi Xpd3 prophage | 1 |
| Shigella flexneri phi Flex10 prophage | 1 |
| Leuconostoc oenos phi L5 | 1 |
| Sulfolobus spindle-shaped virus Kamchatka-1 | 1 |
| Xylella fastidiosa phi XfP9 prophage | 1 |
| Pseudomonas aeroginosa phi Pf3 | 1 |
| Staphylococcus aureus phi P68 | 1 |
| Streptococcus pyogenes phi 370.4 prophage | 1 |
| Pseudomonas syringae phi 13M | 1 |
| Pseudoalteromonas espejiana phi PM2 | 1 |
