SCUMS
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DNA Isolating Sequencing | Uploading Sequences, Basic Statistics
Blast against Seed, GO & KEGG | Boutique databases, Mapping onto Trees | Assemblies, Community Modeling


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Metagenome datasets
BLASTX for similarities
Custom databases
Number of species

Metagenome overview:
  Get the metagenome description, location, name, etc...

BLAST the SCUMS!
  Blast your own sequences against the sequences on SCUMS

Current Projects:

Ocean

Ocean Viruses

- Viral metagenomes from 4 different oceanic regions
- contacts Florent Angly

Coral


Coral reefs of the Northern Line Islands


- microbial and viral metagenomes from 4 different coral reefs experiencing different levels of anthropogenic stress
- unpublished
- contacts Elizabeth Dinsdale and Florent Angly

Saltern


Solar Salterns - San Diego, CA


- microbial and viral metagenomes from 3 solar salterns with dramatically different salt concentrations
- unpublished
- contacts Beltran Rodriguez Brito

Stromatolites


Stromatolites


- microbial and viral metagenomes from 3 different microbiolites
- unpublished
- contacts Christelle Desnues and Mya Breitbart

Aquaculture


Aquaculture ponds


- microbial and viral metagenomes from aquaculture ponds and fish
- unpublished
- contacts Linlin Li and Christelle Desnues

PA1


Porites astreoides


- metagenome from the coral Porites astreoides
- unpublished
- contacts Linda Wegley

Mosquito


Mosquito viruses


- viral metagenomes from mosquitos
- unpublished
- contacts Betty Chau

Coral


Porites Compressa


- unpublished
- contacts Rebecca Lisette Vega Thurber

Lungs


Lung Viruses


- unpublished
- contacts Mike Furlan



Sponsored by

NSF Moore Foundation DoC




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NSF  Moore Foundation  DoC  Argonne NL